Using DESPOT T1 and PD maps to create synthetic T1-weighted volume

command TR FA TE Path_to_T1Map Path_to_PDmap Path_to_output
- I have followed example give by freesurfer to achieve optimal contrast
TR= 20ms
Flip angle = 30 degrees
TE = 5ms

% mri_synthesize 20 30 5 /home/../T1_map.mgz /home/../PD_map.mgz /home/...synth_output.mgh